Scaffold Ga0099697_1413044

Overview

Basic Information

• Taxon OID: 3300006347
• Scaffold ID: Ga0099697_1413044
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1339
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010477	Metagenome / Metatranscriptome	303	Y
F010791	Metagenome / Metatranscriptome	299	N
F026028	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099697_14130443	F026028	GAG	MSVCVNCYHRIRHSNVIEVGQLWNNEPYLAVVCSDKCKDEIEKKVTDGTWMVMRSFPKTESDDGLPTALTDKQFGAT*
Ga0099697_14130444	F010477	GGA	VKLIRYIVFVPYLIFVGLMGGNVLVEAIVIGFVLAMYDFLFDGGGGGRPA*
Ga0099697_14130445	F010791	GAG	MSFEFRAGRKRVVKSVETVEEANELMRSMIAIRNENSLWENIDVKTGHLRAVDELEKLVGTIFDVFDTMSVYMNGKSVRR