Scaffold Ga0099697_1409924

Overview

Basic Information

• Taxon OID: 3300006347
• Scaffold ID: Ga0099697_1409924
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 803
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030124	Metagenome	186	Y
F076495	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099697_14099242	F076495	AGGA	MKTFKQHVEAFQKITVKDKSGKSHTHGAVRLRPGDTHVAIQHYDAIPAKGLAAAVKARTDLSFGSMDKLTKVINHAKKKFGLKKVEIQKIDKKYL*
Ga0099697_14099243	F030124	N/A	AAKSQPNILGLHWVGLGMRAGGKEKSLIIKDYIDGMEKIMKKHSKSLRSVLTDYTKKRTLEPDPDSGDVAMWDELVINNFTIQKIHVSPEFSPDFAQLEKGEGGERMYTFGDRDADIEGFPFELYYEVGDMVDYINRTLR*