Scaffold Ga0099697_1409518

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0099697_1409518

Scaffold Ga0099697_1409518

Overview

Basic Information
Taxon OID	3300006347 Open in IMG/M
Scaffold ID	Ga0099697_1409518 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_1000m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	629
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	1000
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002874	Metagenome / Metatranscriptome	524	Y
F103429	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099697_14095182	F002874	GAG	MKEKIDLSLNRSLEELESSYWEFIEATEGEDSSGWSRSVQEDLSALEGYLMKMEVL*
Ga0099697_14095183	F103429	AGGA	MKKAVIEILYDGEAVLGSQTAGKYMVREYEDDLEMGGGFFKTIEEAEARVIE

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