Scaffold Ga0099697_1111764

Overview

Basic Information

• Taxon OID: 3300006347
• Scaffold ID: Ga0099697_1111764
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_1000m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1821
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 1000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001930	Metagenome	615	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099697_11117642	F000245	N/A	MKTFKEYRLDKKLDKYVSDEIKKRKLARFPVNATDDIKMRMKPNKPAFKFPSPTGSMMIHVYLRKMAPPASKDTMAFNYQLEDK*
Ga0099697_11117645	F001930	N/A	MKRFKQYLKEGVAWELSASKMIFDFQNVPDMKIPFTSKTMEWIFKVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMTADYIDSGIKTEGGVVAELDANIIVSSKSDIMSQPDTTGRRWVELYNIDPKEKMHKEFEKMVIDLAVKHDPRNKEYLKTSPEIGVGVWWKLQSDLQTNFAKDKAGKKLSLIIADYIDGVNAILKKHKKEIQGAVHGYYVRRGAVKVKHPSGRMVGGDSEIKEWNMYDEQVVDKIKIEKVHTFYSQSHADRPKKEIVPHLDKIPHKH