Scaffold Ga0099696_1147110

Overview

Basic Information

• Taxon OID: 3300006346
• Scaffold ID: Ga0099696_1147110
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1164
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005832	Metagenome / Metatranscriptome	389	Y
F070548	Metagenome	123	Y
F098058	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099696_11471101	F098058	N/A	AASVLNTIDGWGNAFELGTGNYYDGYFYVSIYNSTDSDRDDQVVVFSDQNNASSVTLDFNGNAFKHRDDPDDPDTEISILNEEALANAYSNGDFTLLTSV*
Ga0099696_11471103	F005832	GGAGG	MSKDGIWQDSDGMKDSEMVEQWTKTLHTVEYAVEQLKHQKTALMKKREDIVNSEETKNG*
Ga0099696_11471104	F070548	GAGG	MANWNSKELQTPDAIKKIGQNAQNVINNLDILLKIVKGGADVAKMFLLLSNPAGAIIKLAANEIIKAANDFKEIGVFYLFINPNDDGYGNQTTRELGLAIKRDGLTGLYQFKPTVFQVGGEEGGVKTH