Scaffold Ga0099693_1424071

Overview

Basic Information

• Taxon OID: 3300006345
• Scaffold ID: Ga0099693_1424071
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1761
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004453	Metagenome	437	Y
F006662	Metagenome / Metatranscriptome	367	Y
F036739	Metagenome	169	Y
F047121	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099693_14240713	F004453	N/A	MKNFTLTFSEAELETIANAMEDYMQYDDEKLNTEFLFGGLSVADRVDSIQNKIDKVFN*
Ga0099693_14240715	F047121	AGGAGG	MYSRKQFDKDVQKLRELIKACEELEVNNRNYTNSIHFENQINESRYYK*
Ga0099693_14240716	F006662	GAGG	VRTLTTKEYELISQIYNSTDENESQTSFQFGIMNDTYYQLFHSYSEEQNS*
Ga0099693_14240718	F036739	GAG	MITPLSPLVKRKSFPQKLVELVENYVKKGIKTLINVFLNITKRFISFIKSVINRK*