Scaffold Ga0099693_1410935

Overview

Basic Information

• Taxon OID: 3300006345
• Scaffold ID: Ga0099693_1410935
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 975
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001479	Metagenome / Metatranscriptome	687	Y
F012353	Metagenome / Metatranscriptome	281	N
F034958	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099693_14109352	F001479	GGAG	MSREMLFLCDVLTDWCKKNKLPHRCASDLLYSDDTKGRLTGNQVYWLENFISTWDIINQTT*
Ga0099693_14109353	F034958	AGGAG	MKSEVDQIIDNLEFCIETLGLNDEQTGDVLAATNEIGVNVEYFANEFMETSSVQVHQSDYLNIAMFNAMFWEW*
Ga0099693_14109354	F012353	N/A	QICTMTLYTSGDWKVDPNKDITFPLVDWIVKLFPVIKDKEIEINQVDLDGEFAMGFCQDNDGEFLIHVHNGLDIREYVKTLIHEFTHVRQTVDGITDANAREDEAYYLEEQLSKAFWDSNISGTQDVDL*