Scaffold Ga0099693_1344693

Overview

Basic Information

• Taxon OID: 3300006345
• Scaffold ID: Ga0099693_1344693
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1787
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016980	Metagenome	243	Y
F019152	Metagenome	231	N
F053344	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099693_13446931	F053344	N/A	YRRVLKRAKLDEDFYHAIISEYIELLDEHYELQNLEESVTDWEYENTSYVDSLLTTGN*
Ga0099693_13446934	F019152	AGGAG	MEHTKGILFECNLSEEELNTVIDALSRDYVDNDPETLEKEYQLQGKLREIISTFYTKIDAQKFTQMQVQSVKGSTL*
Ga0099693_13446935	F016980	AGG	MKYKELLNQLQHLSKEQLELETLVMIRDKDKFVSPISGLFFVTEFDEYDQDLETGQPYFSV*