Scaffold Ga0099693_1056641

Overview

Basic Information

• Taxon OID: 3300006345
• Scaffold ID: Ga0099693_1056641
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3326
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F005670	Metagenome / Metatranscriptome	393	Y
F018197	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099693_10566412	F018197	N/A	MNTQLPEETNIKEWTNMPPISEELYNELVKEFNNERLYFFNDSYNLED*
Ga0099693_10566413	F005670	N/A	MQLLSRREYNLILRSLDKYELYMNSREKELSEKLQDKLYYNLYNPKDGVAQTKVDVSALYDIKTEKDLSY*
Ga0099693_10566417	F001993	N/A	MNAEQLRYKMKNLNELCPNRSVTNDDEFYELYSKFSELIEDTNYNIDIVDCLTALHCAMEDFEMYA*
Ga0099693_10566419	F004453	N/A	MLIDFTEFELETIANAMEDYIQYDDEKLDTESLFGGLSVAERVNSIQTKIDNVINWS*