Scaffold Ga0099693_1028661

Overview

Basic Information

• Taxon OID: 3300006345
• Scaffold ID: Ga0099693_1028661
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5913
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002137	Metagenome / Metatranscriptome	590	Y
F018383	Metagenome / Metatranscriptome	235	Y
F030123	Metagenome / Metatranscriptome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099693_102866117	F002137	AGGAG	MRVTNHINKSKMKVKEVIEALSYYDGDDDITFYFLKNDTLTNCQVEDISFYTESMGVEFTIQDTSEVMEEVDV*
Ga0099693_10286614	F018383	AGGAGG	MEKITFNNEQLEFLKFIVQDFEYNDDHEKYMIEQIENKIYQAQENQALRVLHGL*
Ga0099693_10286619	F030123	GAGG	MSAISEDGMDKWLDDAYPNLDKRKANLIYEIASLVKDFPDTAPVLIEELVEIMFDEQIDHLEDVIVNHFGVEVYPE*