Scaffold Ga0099693_1021360

Overview

Basic Information

• Taxon OID: 3300006345
• Scaffold ID: Ga0099693_1021360
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12326
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (67.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002137	Metagenome / Metatranscriptome	590	Y
F029472	Metagenome / Metatranscriptome	188	N
F033077	Metagenome / Metatranscriptome	178	Y
F051209	Metagenome / Metatranscriptome	144	N
F056680	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099693_10213602	F002137	AGGAG	MKVKELIKALSYYHGDDDITFYFLKNDTLTNCQLEDIGFFSDTMGVELTIQDTSEIQEEVDV*
Ga0099693_102136024	F029472	N/A	MLSRKTIENLTDKLMVEVANYVTEDPRFTELLNELVPEAIDLELGQVDDYSVVQIITAIQQHLRCSPNHSQVHYPRCPL*
Ga0099693_102136025	F033077	N/A	MTTPQPSNPVPTYKVLRLTTEGWTDFDSQTAVNLTKEQCDQVLKNLTQLEGIDFRELKAVRDN*
Ga0099693_102136028	F056680	N/A	MEYDYEFMWDYEISVHDDLDERVYTYAELDENYARRESTNFQTLAYMHYAC*
Ga0099693_102136034	F051209	N/A	MIDYYCKQKSIQMIFTHTWENETIFHEAYVTDEKFFNVAIREVTEGGDPMEDFVDYDPFHGASDDQLTEICNDIYDFLLLGTLNA*