Scaffold Ga0099693_1019399

Overview

Basic Information

• Taxon OID: 3300006345
• Scaffold ID: Ga0099693_1019399
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10231
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000802	Metagenome / Metatranscriptome	885	Y
F007173	Metagenome / Metatranscriptome	356	Y
F084358	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099693_101939912	F084358	GGA	MTLIDFDKKELLDISHALLSYRTDSTVIREGGLTDEQKERYKRLTSLIEKVSQLRNVCECGGKSN*
Ga0099693_101939923	F000802	N/A	MYFDPKMTLDEYEDFKLHDEINIGYDVEEDDLPDQYDDESYIDGLLTTGFHAVDASEMFGEEVVGYSLY*
Ga0099693_10193993	F007173	GAG	MQTTTTKAIISRNNLMEYIHEDRDLLMGLQDDLSDMLYATGKFSITLDEIVNQFMPFFPLYLIENEDEIKQAYPDRFDDDHLFIFDRDLTPNEINLYVEWLD*