Scaffold Ga0099693_1018030

Overview

Basic Information

• Taxon OID: 3300006345
• Scaffold ID: Ga0099693_1018030
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0075m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1050
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED240 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031660	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099693_10180302	F031660	N/A	TGHAKHIELSFYTNITNMQDKWLEQLSKFERVIVNCSLEGMEEMNDYLRPPSKWNSVWKNFDKLVKFADTKAGKRIKVRVTTVNQMTNALHITKFWKFMHDYQMSSNRGIGMSTNQLIEPQYYSMAYAPEWLKERQREQILEFLKSIGNSPHFKQYEEPLMEVVNFSLDRKHKYDPNIMREYVKVTENYDRFRNQSVTKVSPEFERIRNELN*