Scaffold Ga0068493_10760503

Overview

Basic Information

• Taxon OID: 3300006341
• Scaffold ID: Ga0068493_10760503
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 686
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001135	Metagenome / Metatranscriptome	767	Y
F001487	Metagenome	686	Y
F007035	Metagenome	359	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068493_107605031	F001487	N/A	LTKKFTIEVSNESTAQLSTIALELKIMSNGCAKYFPRIMINGQKL
Ga0068493_107605032	F001135	AGG	LTAPGLWDILGSMTTLIYKDKKYKLPFEINSHSVAMVKRTNGLSGESIELPGFAAAVYDYTMYKTMEMEQLDKATKQQPGFSDNQDGWQIVRNGINFFRRYFAKEYMVLLD*
Ga0068493_107605033	F007035	AGGA	MYFILEDHNGHFYTETMANHEFPSLQAAEKKLQALKELKPKGKYFIVTRVQA*