Scaffold Ga0068493_10203700

Overview

Basic Information

• Taxon OID: 3300006341
• Scaffold ID: Ga0068493_10203700
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8946
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (67.65%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F055789	Metagenome	138	N
F058216	Metagenome	135	Y
F061266	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068493_1020370013	F055789	N/A	MSDPYLEKIAQEKHLHECEKEIAEAKKEIFTLKQEIIHLKAEVKYERELRIHGADYHKPKDYHSRLRAMIEVVKKGTDLTDIHDIVDEAQRRLVNE*
Ga0068493_1020370014	F061266	N/A	MFGTKIKEKQLKRFMVMCKSKTGTTFYHEKSFFTLADADAYANLVRRQEDEQGNNFYLFEQSKHYGNGEDKK*
Ga0068493_1020370021	F013700	GAG	MDFKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMASGDMVRGEFLRRIAQIGYDELKYKDIADKLEEDVDDNNSHLFSKYYEPSETNEDDDEV*
Ga0068493_1020370024	F058216	AGGAG	MNKTIGQLIKEDHWSTRRLAVSMRITQADLKGVKWEKSNKPYKKSKKKSYLW*