Scaffold Ga0068493

Basic Information
Taxon OID	3300006341 Open in IMG/M
Scaffold ID	Ga0068493_10202679 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006341 Open in IMG/M

Scaffold ID

Ga0068493_10202679 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2790
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2790

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	770
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

770

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F005516	Metagenome	398	Y
F005610	Metagenome / Metatranscriptome	395	Y
F034603	Metagenome	174	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0068493_102026792	F005610	N/A	MRSFKEYLTEADSEEVRDAKKVFTALQGMYPKIPKFPLVFKNLQTSKNLDKRGGGYLQTSKLKGGKFIFVDKMVIDDSGLGSFEPDYAVVHEFAHAILAFTKRDLGHNKRHADLTYKLAQKFGLA*
Ga0068493_102026793	F001930	N/A	MKRFKQYLKEGVAWELSASKMIFDFGQMSNMKIPFTSKTMEWIFKVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMSADYIDSGIKTEGGVVAELDANIIMSSKSDIMSQPDKTGRRWVELYNIDPKEKMHKELEKMVIDLAIKHDPRNKEYLKTVPEIGIGVWYKLQTDLLTKFDPAKAGKKMALIIADYMDGVNTILKKHKKDIQGAIHGYIVRRGTVAVKHPSGRMVGGDSEISEWNAWDEQVVDKIKIEKVHTYNTARRAGDWVKTDIIPNLGKIPHKHWKSTKELSTYISQVADAEVRVLRRSKG*
Ga0068493_102026794	F034603	AGAAG	MKSFKQYLKEGPPKWTESLSTMLFDLPRAGLKDVLLPLSPAILKRIWPKPPRTTVFHLTDYAGIKKLKGLQGKQKSISAFFNITSRAIDDGVATSGGYAVELIGDILAAAPDDLSTRPDKTGRRWLAFSTLVNPIDFGHFGDGIGGGKKLKGMENDINEMMIEIIMKYADDPKFMPNVNKSWIALGKEYKNEGKILSLIIKDYIDGMEKVMKKYSAKLKSVLLDYVKKRAQEPDPDSGDLPEWDEIVVNNFKIQ*
Ga0068493_102026795	F005516	GGA	MIRFKTYLKEFAQRSTSEYVFDTHSANSSSLKIPISTSMFKRIWPDTIRATVFHTTDLAGLERLGKLEGGKKTISAFFSMISRYMETGVATSGDVHVVAEMDADVLISARDDIWSLVDNKGRRWVEMSWFANAYLGGTGPKFNKVEKDLNTLIKNLVKKHLTP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068493_10202679

Overview

Ecosystem & Geography

Associated Families

Sequences