NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068493_10127530

Scaffold Ga0068493_10127530


Overview

Basic Information
Taxon OID3300006341 Open in IMG/M
Scaffold IDGa0068493_10127530 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1418
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005148Metagenome / Metatranscriptome410Y
F009404Metagenome / Metatranscriptome318Y
F060967Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0068493_101275302F060967GGAGMNKSRVARDLWRKVFNDNLINLSDGDARKGVVRDFLNDPINKKAGWKSKDARFFRLGFQKVAKENNYNVMSIGVHQLPLVQKHKKEQ*
Ga0068493_101275303F009404AGGAGMSSDEPEHIQPKGESLVKHCPICGVEFDETVLTNRWLKCDSCETIFHVKVKAGE*
Ga0068493_101275304F005148GGAGMKQKKYEEFLRKNLPESDEVECKKCGLKFYDEFNLICLSALDMCLLCANRNLDKETIKEKYHVK*

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