Scaffold Ga0068503_11004235

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_11004235
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 934
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F013820	Metagenome / Metatranscriptome	268	Y
F015741	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_110042351	F015741	AGGA	VACLTFSTGCSFPWGTVIPPIANFAIGFYDANDYYSKECLWYDEVKLNQATKEWLLESNPPEIVSEDLAQVSRNNDIYKEVCKEHKS
Ga0068503_110042352	F002078	AGCAG	MEMFADQSWFQIAGQIVLIFTAVTGALPDRFVQKIPVLGTLWPIFNWLAGNVFNNINHPKGMAAKADVEKEIDEAKAKVRTRSGMPDVLDGM*
Ga0068503_110042353	F013820	AGGAG	MVPTIIGFIDKLWPGGKTYALMGLGVLMTICQMGGWHNFSPEAWGLLGIGGAATWKMGADRK*