Scaffold Ga0068503_10661088

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10661088
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1223
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F007052	Metagenome / Metatranscriptome	359	Y
F023718	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_106610881	F007052	N/A	MEKNETYFVARLLKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSTRVL*
Ga0068503_106610882	F001048	GAGG	MKIKSTKQFWWRFNHLKRNGGEITVTDRTPEMDVKDFNRIESLVRKRVRWEIGSEGIAVWNACGYKDIPTLAKAYGIK*
Ga0068503_106610884	F023718	GAG	MKEKIDLSLNRSLEELIASYWEAVNGEIDNTQWGSFYTLENYLSDLGAI*