Scaffold Ga0068503_10592358

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10592358
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1179
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038419	Metagenome / Metatranscriptome	166	Y
F049705	Metagenome / Metatranscriptome	146	N
F084726	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_105923581	F084726	AGGA	MTNNTVNLDNLMSRIAAVSGDEIRLAVLQDEIEIHKSRLEPNGMGHLHTAISVIKRRIEEIT*
Ga0068503_105923582	F049705	GGA	MVFKGAMIVILMLTSCSYDTKVVCDYRWHHEMTMKKLMQRCNYIPYGDAWVIKQGKEYDK
Ga0068503_105923583	F038419	GAG	MIITTTTMMLVQAIIVTWIMVTAPTPCPQDYLDLGGDVIEYCELIPHGSGRQWSLKEQ*