Scaffold Ga0068503_10535507

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10535507
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1677
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005336	Metagenome / Metatranscriptome	404	Y
F006423	Metagenome	373	Y
F061278	Metagenome	132	Y
F077768	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_105355072	F005336	GGA	MEAGIQGGGGLVVELDANIIMSSKGDLMSMPDKTGRRWVELYNIDPKEKMHTELEKMLIDLAIKHDPKNKEYLKTVPEIGIGVWYKLQSDFKDDGKKISLIIADYIDGVNAILKKHKKDIQGAVHGYYVRRGTIAVKHPSGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTYNTARREADWVKTDIIPRLGKIPHKHWKSATELSTYISQVADAEVRVLRRSKG*
Ga0068503_105355073	F061278	N/A	MKSFKGYLKEDPPAWQSSTSQKIFDFGQMSNMQIPLTSSTMEWIFQVQLPRATVFHVTNGIGLGK*
Ga0068503_105355074	F006423	AGGA	MKTFKQHLNEKTEYYLDTSQDNTEKYVAYDGDYWYTGKIGMRGGDRYLKFAATHGKNSYFERDKLKKTTPEKLEKDVGFTVDFKKLYKR*
Ga0068503_105355075	F077768	N/A	LGPYKKGLTSRELNKAWSYLGKSTGGKVKSIIIKDYIDGMEKIMKKYSIKLKSVLLDYVKKRALEPDPDSGDVAEWDELVVNNFKIQKIHVGPEFAPDFEEDDDIDGFPFELYHDTGDMVDYINRTLR*