NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068503_10498182

Scaffold Ga0068503_10498182


Overview

Basic Information
Taxon OID3300006340 Open in IMG/M
Scaffold IDGa0068503_10498182 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1349
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium TMED67(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042373Metagenome158Y
F067827Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0068503_104981822F042373N/AMCRITKAQDVYIWGNFAILPEHPYEEQRICIKCAKREHGKRTKLENIINERTKKWLRKQQ
Ga0068503_104981824F067827AGGAMERDGDLGTYLKFNFENAIEIIDKLTKDNNALLDKIEELEAKLNKPITIKQEPIRSRFNQVSKEADSAMKRFTAKLRKELNNAKSKQSQGQPV*

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