Scaffold Ga0068503_10485393

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10485393
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 896
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacterales incertae sedis → Candidatus Fonsibacter → unclassified Candidatus Fonsibacter → Candidatus Fonsibacter sp. PEL3 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010477	Metagenome / Metatranscriptome	303	Y
F025858	Metagenome / Metatranscriptome	200	Y
F069325	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_104853932	F010477	N/A	MKLRYAIFVPYLIFIGITGGNVLVDALVIGLALAMYDFFFDNGGDGGRPA*
Ga0068503_104853933	F069325	GAG	MSVCSNCYKSQISIKHDVGHWWNNPPDHVYVCSDKCYKELEQHVKNKTWMLHRPAAMFGKSKKVTKGLTALTDKQFGV*
Ga0068503_104853935	F025858	N/A	MRSRYGIQVLDHQGNKPNKEYHKKHRPPHREYPTRLYKNHGGWMVWLTCDIKGRNEGL*