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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006340 Open in IMG/M |
| Scaffold ID | Ga0068503_10470913 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hawaii |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2493 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 770 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001493 | Metagenome | 683 | Y |
| F001930 | Metagenome | 615 | Y |
| F005610 | Metagenome / Metatranscriptome | 395 | Y |
| F023211 | Metagenome / Metatranscriptome | 211 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068503_104709131 | F023211 | N/A | MKTFKKYLREFAQRSTSEYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRTTVFHTTDLAGLESLKKLEGGKKSISAFFSMMSRYMETGVATSGDV |
| Ga0068503_104709132 | F001493 | AGAAG | MKSFKQYLKEGPPAWTESLSTMLFDLPREGLKDLKIPLSSPIFKRVWPKTIRSKAFHVTDFDGVHKLKRLQGGKKSISAFYNMDDYIIQSGIKTEGGYVVELEGDVLVAAPDDISSQPDKTGRRWLTFSTLMNTSTAANPGLGGKAKLRGIDKDLENLLVGILEKNGVDVEEAAKRQTNILGLHWVGLGMKAGGKEKSLIIKDYIDGMEKIMKKHSKSLGSVLTDYTKKSTLDPDEDSGERAMWDELVVNNFKIQKIHVGPEHAPDFEDDDDIDGFPFELYDTPEDMVDYVTRTVQRIKL |
| Ga0068503_104709133 | F001930 | N/A | MKTFKQYLKEGVAWELSASKMIFDFDVVPNMKIPLTSKTMSWIFNVQLPRVTVFHVTNGVGLQNLKRMQNKKKSISAFFNMNADYIDSGIKTEGGVVAELDANIIVSSKSDIMSQPDKTGRRWVELYNIDKKYKMEKEMTKMLIDLAIKHDPKNKEYLKTSPEIGIGVWYKLQTDLLTNFAKDKAGKKMAMIIADYIDSVNVILNKHKKEIQGAVHGYYVRRGTIAVKHASGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTYNTARRAGDWVKTDIIPKLGKIPHKHWKSATELSTYISQVADAEVRVLRRSKG* |
| Ga0068503_104709134 | F005610 | N/A | RFSMKTFEKLFEELSPEIRNAKRIFGALQAMFPKLPKFPLIFKNLKGRGSGYLETSKIKGGKVIFVDKMVIDDSGMSSFEPDYAVVHEFAHAILAVTKGDLGHNKRHNDLTYKLAQKFGLA* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |