Scaffold Ga0068503_10469714

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10469714
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2126
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003635	Metagenome / Metatranscriptome	476	Y
F038418	Metagenome	166	Y
F067835	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_104697145	F003635	GAGG	MNEKNTQALLDLINKLITLVGKNVDNINDLAKEIAELKAKR*
Ga0068503_104697146	F038418	GGAG	MTDKNQQWIWWINKENPKRIHKTFLGTFLKDINKGLTTRNTSIQDAKKCVFLTRMDFDKPYIFFCTYNDAIQWKNLNTK*
Ga0068503_104697147	F067835	N/A	MEKPKYKVIRWSDDGTEEIWEAPQKPTFQEMYKLINCTTIERQSGYDKDISNRTFDMWCDEESNMKGDEFIKRN