Scaffold Ga0068503_10462404

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10462404
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4442
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005336	Metagenome / Metatranscriptome	404	Y
F034993	Metagenome	173	Y
F061278	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_104624044	F034993	AGG	MKTFKGYLTEFAIQSTSDYVFMAGTNSSDLMIPISGPMFKRIWPDTIRATVFHATDPDHLAGLKKLQGKKKSISAFFSMMANQMEGGIATDGGVVIEMEADVLISAKDDIMSAVDKTGRRWVEMSWFENANMTGPKFNKVEKDLNTLIKELVVKHLTPIMGKNAVVREHEYELWGNMKKHLKAGTVGGGKRLSLVIKDYFDGVEKVIKQNKKVFETIFYGYAKSKRQTDNAWDEQIVNNIKIKKVHILSDEVDLDHLHDMYPKGLVHEFPDVKFWDASIDLEIYTRQVVAKEIGRKI*
Ga0068503_104624045	F005336	N/A	MPDKTGRRWVELHNIDTDEKMHPEFEKMLIDLAIKHDPRNKEYLKTAPEIGIGVWYKLQTDLLTKFDPAKAGKKLALIIADYIDGVNTILKKHKNDIQGAVHGYIVRRGTVAVKHPSGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTFNTARREGDWVKTDIIPILGKIPHKHWKNAAELSTYISQVADAEVRTFGGWARKK*
Ga0068503_104624046	F061278	N/A	MKSFKGYIKEDVAWLQSTSKMIFDFGQISSMKIPLTSKTMTWIFNVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMKLII*