Scaffold Ga0068503_10453521

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10453521
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2187
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010477	Metagenome / Metatranscriptome	303	Y
F022673	Metagenome	213	Y
F069325	Metagenome	124	Y
F072444	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_104535213	F069325	GAGG	VSICSNCYRSQISIKHDVGHWWNNPPDHVYVCSDKCYKELEQHVKNKTWMLHRPTAMFGESKKVTKGLTALTDKQFGVE*
Ga0068503_104535214	F010477	N/A	MIIQLQIRYLVFIPYLIFVGMMGGNILAESIVVGLALAIYDFFFDNNR*
Ga0068503_104535217	F072444	N/A	MPERENNAFWEIAEIIDREMSILRKMRPVGLKEKALLKKMTEDKEKEHEKRTNSQP*
Ga0068503_104535218	F022673	N/A	MKKEQIVSPRVEIAEKIHEELLTSLELERKLLKKELTLQETMSERVMVRKDLINCERKIKDLTEQLQKENNRSKVTKWNKQP*