Scaffold Ga0068503_10451636

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10451636
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2238
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002768	Metagenome / Metatranscriptome	531	Y
F003611	Metagenome	477	Y
F011036	Metagenome	296	Y
F017656	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_104516361	F003611	AGGA	MIVIMKELFWAFYFALHFAGAFLGIVIAINLSTWLGLGMFAFFLVKFMLMMPEIKRSI*
Ga0068503_104516362	F002768	GAG	MKRSWWSLKIHDYPNYEPNDADLEHIAEQIKQGMDQGVLIQEDEGPASSKLQAL*
Ga0068503_104516364	F017656	N/A	MNYFIHDERDLSPAYVKSCKKLLKEISHKLQAASAMKQTQSKSRIKI*
Ga0068503_104516365	F011036	AGTAGG	MKKFTIEVSHASGPQLSTIALDLKIMSNGWARHGPRIMINGQKLQAPSLTIPGSRTKRQASDTIE*