Scaffold Ga0068503_10408142

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10408142
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1029
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054925	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_104081421	F054925	GGAG	LCCRLTRKQHNDMADAFQNIDLEQINKDVEKKVKGILDNLDLESINTRVKEKLKSINISESVDTFSDDRSYINALPETYKEKTLRYIDVFRDHPEIVQDYIKAIKEWGTEKDAKKAGSTAELLYPTKLLTKVLKNPEYEKDAKRFFMIMNPLQGNEVYDLSLREDNLGILKQKEWQDKTSTKIVGGVTDAFQGTVKELTKTVARLVDWGLDTKSLAYIESNWPEA