NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068503_10394483

Scaffold Ga0068503_10394483


Overview

Basic Information
Taxon OID3300006340 Open in IMG/M
Scaffold IDGa0068503_10394483 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4890
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dadabacteria → Candidatus Dadabacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)770
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000226Metagenome1525Y
F013700Metagenome269Y
F026709Metagenome197N
F058216Metagenome135Y
F058444Metagenome / Metatranscriptome135Y
F096041Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0068503_103944831F013700GGAGMDFKNLTYPFEEVGDAPFNVVRILNECYNDYSNGNLGDGEHMASGGMVREEFFKRIKQIGYDELKYKDIADTLENDVDENNSHLASKYYEPPETNEEDE*
Ga0068503_1039448315F000226AGGGGGMKDRTIKALPEYLQPKILSAVAYVNECAPNLNKAVERINTIREQLSEKEVMWVMSLLTFEKLLDIVKDSQEFGKYTSAMKARTIN*
Ga0068503_103944832F096041AGGAGGMNKNKEYIYITRTMKINVPAIYCQDAIDKIQAMKKQDLIPKELGFLYTRCRVRDRGRNKYGL*
Ga0068503_103944834F058216AGGAGMNKTIGQLIKEDHWSTRRLAVSLRITNKDLEGVKWEKSNKPYKKSKKKSYLW*
Ga0068503_103944837F026709N/AMVANKQHTMYIILIKDNHRYKLYTNEIFTTEKETLDYVKRSKFKKNVEWKVEEFDNKYFRGGK*
Ga0068503_103944838F058444GGAGMTLEKLLKSLNSIPKKHLNTDVRVSVDTLIEQGITENFWFTDVEVREPDGGLTHPEIIINGSE*
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Bioinformatics & Integrated Biology Lab
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