Scaffold Ga0068503_10393577

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10393577
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1514
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011406	Metagenome / Metatranscriptome	291	Y
F101847	Metagenome	102	Y
F105860	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_103935772	F105860	AGGA	MADKKMTRMLQTTTPASGDLMLVVVDPSGTPLNKTVTITNLANTVANQNKTGNTVQSNADGVDTVFKQYDGTEVARIYDGAVVPTVSGSTYTLSAGTGFGFRRRILTLSAGGGNNLTLTAADSGAIIYVTPTEPVDLILPLVGTETGIWFEIIFAAKVNKAFEIKTSGQDGNDNITVMNQYVGPSQNFDVGGSDHDVLYIANANIGTRIEIINCAGGAAEKWHAYVRSLGSQAATIS*
Ga0068503_103935773	F011406	AGGA	MALIKATMQMELAGVFSGSHPTALKPGEKIAKAFKNYLQGGMNAGGFPTSNVIDAPTGMAIGGVFASQLPVGAAIGSQIATALTTMALTYLSGQQIGPPVAAPSHTPGLIQLFSGPQPAGMAFAKELSGILDTWTKTWVVSGLIPGAPPVPFTGPLS*
Ga0068503_103935774	F101847	N/A	GEVSISTSGKVKVKGVVATLKEILDTLIDEVLNHTHPTGTGPSGPPMPPATVNLALLKSLKIGQSLE*