Scaffold Ga0068503_10366284

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10366284
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3334
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002030	Metagenome	601	Y
F043989	Metagenome	155	Y
F099450	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_1036628410	F099450	AGTAG	MVVWIAIVTFWMPIDGGPISRVIDREFTNEVECWNYYEGSYGESRFGTQNLTHQGVPPGKGFHFTWDHLEYPIRTYNGKDGSGPIWLTCDIKGRYEG
Ga0068503_103662845	F002030	AGGCGG	MIGFLIFGLVVLSTVCLWLLIEERKSPKFLVWFIPVLLVIVTSTYVTYTSILGFPKFGTPEKGMYLRHYVDEPNWIYLWVLSKKNVPMSNQLVYTRKKHDSLEGVKGKAEEGKFMVLSEDALEGGGQELVGDEGGERGGGYTIGGDVSFYEWDFTENMPQKNQEESR*
Ga0068503_103662849	F043989	N/A	MIKYGIYIIIIWSLFESSCSSGKGNLPYHPPEFAPIYREECYSDNKNFLCMDKEKDASYTSPFIYFLFMRGTNDPDSF*