Scaffold Ga0068503_10355045

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068503_10355045

Scaffold Ga0068503_10355045

Overview

Basic Information
Taxon OID	3300006340 Open in IMG/M
Scaffold ID	Ga0068503_10355045 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4684
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	770
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F012510	Metagenome	280	Y
F016590	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_103550454	F001930	N/A	MKRFKQYLKEEVAWQQSTSKMIFDFGQMSHMKIPLTSKTMEWIFQVQLPRATVFHVTSGVGLEKLKKLQNKKKSISAFFNMSADYIDSGIKTEGGVVVEMDANIIVSSKSDIMSQPDKTGRRWVALYNIDPKYKMEKEMTQMLIDLAVKHDPRNKEYLKTSPEIGVGVWWKLQSDLQTNFAKDKAGKKMALIIADYIDGVNVILNKHKKEVQGAVHVYYVRRGTIAVKHPSGRMVGGDSEISEWNAWDEQVVDKIKIEKVHTFNTARREADWVKTDIIPRLGKIPHKHWKSAAELSTYISQVADAEVRTFGGWARKK*
Ga0068503_103550455	F012510	AGG	MRTFKSFYDWGKSLKEHLNEVYKDYPGKGWVHGTKDAPKINPKDIVWRSKVHHWDNTVRSDDTRMIITNTGKGKDKFQMWAVSDKSGDVVFHFGDKPTLDDAKEFASIRKWQEKK*
Ga0068503_103550456	F016590	GAG	MKTFKGYLTEFAQQSTSDYVFDTPSGHSGSLKIPISGPMFKRIWPDTIRSTVFHVTDLSGLKRLKKLEGGKKSISAFYSMMSRYMEKGVATGGGVVVEMDADVIVSASSDIMSEVDKQGRRWVEMSWFANAQRYGVGPAFGKVEKDLTTLIIGLVKKHIPKDKEIQQTKHFGKDAGAAFDIWSNMKHHLKGDGKILRVVIKDYFDGVEKIIKKHKKTMENIFYGYAKSKRSTEDSWDEQLVNNIKIKKVHLIHFRDSDWPGIEDAEGFPAKDYAKDNNWSTKVWDSSTELEIYTREVVAKENGRII*

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