Scaffold Ga0068503_10345843

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10345843
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2305
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007055	Metagenome / Metatranscriptome	359	Y
F014792	Metagenome	260	Y
F020372	Metagenome / Metatranscriptome	224	Y
F084726	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_103458432	F020372	GAG	MNKATIRVYIDGKEMLYSHQNIIGAINAFLPYLTNDDLDELMLRFHTLKDHRRQKEYLAMLEAKKHSWPYPDTINKDDTT*
Ga0068503_103458434	F007055	AGAAG	MIWIAIVMTWNPVIYTIDKEFTSEVDCWNYYDNGVGESEMRSRYGTQVLDHQGNKPDKEYMKKHRPSHREYPTRLYKNFGGWMVWLTCDIKGRQEGL*
Ga0068503_103458436	F014792	N/A	MNNERENYSWGIIQDMIEREISSAFKLRDPIKMPSKKEIKQIIKHTVQNNREK*
Ga0068503_103458439	F084726	N/A	IWTTIGAVTRDEVRLAVLQDEIEIHKSRLAPSGMGHLHTAIAVIERRIEEIT*