Scaffold Ga0068503_10344766

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10344766
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4341
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F008341	Metagenome / Metatranscriptome	335	Y
F015350	Metagenome	255	Y
F041248	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_1034476610	F041248	GGAGG	MKGRTGKRLRQEGAIKRIDASILVYEEQLKSNKDDNEKKLLKKKIERAQTTVENTKENMK
Ga0068503_103447662	F004843	N/A	MRKYIFIIILASTLGLNGCADTADAEDSTVITPVDNQDATDSGTNSSDGPTIWIAIVMTWNPVIYTIDKEFSSEVNCWNYYDNGVGENEMRSRYGTQVLDHQGNKPDKEYMKKHRPSHREYPTRMYKNFGGWMMWLTCDIKGRYEDL*
Ga0068503_103447663	F015350	N/A	MLVGWQYDAALQKNFHEVESRIKKFESVDLFNHIESVDILNKKQMELQALEEEIKEKFVIQERELRAQVKTIETKLQKLRSELNDGLTKIERNVSTIDSVVDEKFKTLWMMINNK*
Ga0068503_103447669	F008341	AGG	MSETLRKIVVETMIPANFKFMARDLDGSVHVFENEPNLDYGTNKNPLPCDMWDDPSGGDTMPVSFKTSTDAGDLTEELGDWRDSCIEITGGN*