Scaffold Ga0068503_10344421

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10344421
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3061
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014792	Metagenome	260	Y
F022756	Metagenome	213	Y
F049705	Metagenome / Metatranscriptome	146	N
F084726	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_103444211	F049705	N/A	SMVFKGVMIVILMLTSCSYDTKVVCDYRWHHKMTMKKLMQRCNYIPYGDAWVIKQGEEYDK*
Ga0068503_103444212	F084726	AGGAG	MTNNAINLDNLMSRIAAVSGDEIRLAVLQDEIEIHKSRLQPSGTGSLHDTIAVIKRRIEEIT*
Ga0068503_103444215	F014792	AGG	MVFTMISENNERENYSWGIIQDMIEREVSSAFKLREPIKMPSKKEIKQIIKSTVKKERK*
Ga0068503_103444219	F022756	AGGA	MKTILDLVILNLIQVILTVVTICLLVSCAPETRPPLWLRAIETLPPVEGFSRAGLFTINDKIYVQFCDPQGNQIWLRYNGDKNTWRQSRYNSQGCVDGDNATGPIELEKNG*