Scaffold Ga0068503_10340937

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10340937
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3340
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015350	Metagenome	255	Y
F018553	Metagenome / Metatranscriptome	234	Y
F032036	Metagenome / Metatranscriptome	181	N
F062843	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_1034093710	F032036	GGAG	MKWIILVYLTIAAGTTEGDISYTRLEHPAKDFQECVDIEQQINDIVHRGRESETKYVRFLYWEYKNILHEIKAECIYADSPVSNPKWFSEK*
Ga0068503_103409372	F018553	AGG	MLCIPKLRIAILNEEIALWEKRLCDNPDDIPYLGYIRTTLRGRVKELEDQEKKLDKQEKD
Ga0068503_103409377	F062843	AGGAGG	MNIWIEYWEKSKEPSKNTHAQIREQDHWESPDPEKVHKRFCQGREDANRYAKSLQEQGYHVIIKQDNGGY*
Ga0068503_103409379	F015350	N/A	MKKVVKWLIIIVMAILVGWQYDAFQKNLHEVESRIKKFESVDLFNILEQISLAHIESIESVDILNKKQMEVQALEKEIKEKFTIQERELRAQVKTIETKLQKLRSELHDGLTKIERNVSTIDSVVDEKFKTLWMMINNK*