Scaffold Ga0068503_10295724

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10295724
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8183
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001930	Metagenome	615	Y
F002715	Metagenome / Metatranscriptome	535	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_102957242	F002715	AGGA	MSEEELQTVKLEVGLLKNEVEVRGRQVDALLRKLEKTTDSLIELTVQIKTLNTRQQDHLTHDNAVRDELKLLHTRIGSLHDKLIDDHSEIEKRLDSLDQYKSKLMGMIIVVGGVVGMIGAWLLGFIKD*
Ga0068503_102957243	F000245	AGGA	MKTYTEFKESRLDDKLDKYVSDEIKKRKLAKHPVNATDDIKMRMKPNKPVFKFPSPNSDMMIHVYLRKMPPPASKDTMAFNYQLEDK*
Ga0068503_102957244	F001930	GAG	MKSFKGYLKEDVAWLQSTSKMIFDFDVVPNMKIPLTSKTMSWIFNVQLPRVTVFHVTSGIGLKNLKRLQNKKKSISAFFNMTADYIDSGIKTEGGVVAELDANIIVSSKSDIMSQPDKTGRRWVALYNIDPKYKLEKEMTQMLIDLAIKHDPRNKEYLKTSPEIGIGVWWKLQSDFLDDGKKMSLIIADYIDGVNAILKKHKKEIQGAVHGYYVRRGTIAVKHASGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTYNTARRAGDWVKTDIIPNLGKIPHKHWKSTKELSTYISQVADAEVRTLRRSKK*