Scaffold Ga0068503_10259995

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10259995
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2566
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000319	Metagenome / Metatranscriptome	1307	Y
F012881	Metagenome / Metatranscriptome	276	Y
F024328	Metagenome	206	Y
F040337	Metagenome	162	Y
F041444	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_102599952	F012881	GGAG	MFGKNKHAMLFTHLIVKVRKYEDQQPYFSLYSMPAIADETKARISVEKLNDLAELEKEENWQTEYYSVPMTL*
Ga0068503_102599953	F000319	N/A	MFKDLLLIISGATLCCAFYFWQDYKRNKEIKKQERLNEIKTN*
Ga0068503_102599954	F041444	N/A	MKSKQIEECKEQTKILFKVVDKLEQRIATLEKVIGKLQLRLGDVVLYIDKRGEENDINSNGKRNN*
Ga0068503_102599955	F024328	GGAG	MTLTQMEKEIIKAIRIESKIPLASDVGYKSLIKFVKKLFKEYRSE*
Ga0068503_102599959	F040337	GAGG	MNNLLKPNTTWLVVKWVHYDSLNFTDDYSVPKATNNKGKADQYLHSLNMLNDSKNTSYFIVSVPHE*