Scaffold Ga0068503_10249676

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10249676
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3475
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F024128	Metagenome	207	Y
F027651	Metagenome / Metatranscriptome	194	Y
F054947	Metagenome	139	N
F078832	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_1024967612	F027651	N/A	MKIRNNIKSNKDLKVKKVNLNAIVESNIKWEAVGLANSLNQNYHNWLECVTDKKDYCIESDKFGHGFGTFSGSKYWRIEASQNSGCNYIIDQKNSKMYSTAHKEKHVWGYVVKKTSANYNRGDILTHNFKVVGNVLTGNKVNLGMPNSHYPNYTVCWSHNEIWKRN*
Ga0068503_1024967614	F004418	N/A	PYRWICQIFLPREIETIFSKMKKIINWLKDDWKNNRFRLFCETIGSLCFIAIYVLMAWYGESVSIMNIFLIQLVGSTLHIVNAYLRNSVNLIALNCIVIAIALFGLAKMALSI*
Ga0068503_102496767	F078832	N/A	MIKNQNISDELVETYILHNGFEQKAGEMYECPGGHIWHWADIVDAIENLTPPELYNLCFLAEQDNVKNEEYFDLTRGA*
Ga0068503_102496768	F054947	GGAG	MQMISNKNLKKIFQHFSNEILEELIPKDMVVPKLRMQFSMQNLSWLCRNLQIKNKQHPEIKQTMAKLNTLRMKILLKGK*
Ga0068503_102496769	F024128	AGG	MNINCTHLSEKPKNYKERGNASLSDNLKYINDTVSHIDINRYQGAGPIIYCVVAKALTINIVSGKKAFVVWAVQEHEDFETAVQNAKDELRNRICMGAPVLQHASPDEDVKNLVEY*