Scaffold Ga0068503_10225398

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10225398
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4961
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F002874	Metagenome / Metatranscriptome	524	Y
F010791	Metagenome / Metatranscriptome	299	N
F012919	Metagenome	276	Y
F026902	Metagenome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_102253981	F010791	GAG	MSFEFRAGRKRVVKSVETAEEANELMRSMIAIRNESSLWENIDVKTGHLRAVDELEKLVGTIFDVFDTMSIYMNGKSVRRIWSRGF*
Ga0068503_1022539811	F000615	N/A	VRRNQNNIVSGLERPVNIMCRIRTFYECSDGTMGFAEMVLSYDEDIAAHIRHWGTGGRMVILNI*
Ga0068503_1022539815	F012919	GAG	MNISREKLNLEVVKYLKNGGKITKLPDGPDYRFQPYGVRVTPGDPKVDLTISDTPTTKQQISYVEKNSL*
Ga0068503_1022539817	F002874	N/A	VSGLVRPENIMEIDLSLNRSLEELESSYWEFIEATEGEDSSGWSSSVQEDISALEGYLMKMDIL*
Ga0068503_102253984	F026902	N/A	MNRYRIEYAEKDIPGILCKYVTGTEELLSVLLKLKYFDKLKSFDNVKVCRN*