Scaffold Ga0068503_10221596

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10221596
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1647
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022756	Metagenome	213	Y
F033079	Metagenome	178	Y
F050431	Metagenome	145	Y
F062842	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_102215961	F062842	AGAAG	MIKWIIIIAIALSLSGCADTADAEDSTVTTPAEQQNRTADASGDTTWIAIVMTWNPVIYTIDKEFSSEVDCWNYYDN
Ga0068503_102215962	F033079	N/A	MIDEPVEIAGNRLVWRHIQRENQRMILDPLGYDAIKDIDEIHSRNRRRTDDPYLKATSEKIAHHFPKIDDAERR*
Ga0068503_102215963	F050431	N/A	MRYAVGAFLLYTIGYLGGDIIIASIWVGVAYGFIDLMKQGEI*
Ga0068503_102215966	F022756	N/A	IQVILTVVMIVLLTSCAADHRAPLWLRAIETLPQQVEGFSRAGLFTINKKIYVQFCDPSGNQIWLRYNEDKHTWRQSRYNSQGCVDGDNATGPYVE*