Scaffold Ga0068503_10219108

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10219108
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5018
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011337	Metagenome	292	Y
F023211	Metagenome / Metatranscriptome	211	Y
F035798	Metagenome / Metatranscriptome	171	Y
F090861	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_1021910813	F011337	N/A	MKRFKQYLAEIGVDPFKIVGKPAWTESLSTMLFDLPRAGIKDIKIPLSPAIMRRIWPKPVRTTVFHLTDFDGLGKLKKMQGGKRSISAFFNIDPIVIESGIKSEGGFIAEMDADVLVASQDDISSQPDKTGRRWVTLSSLMNKPTDPDPGLGGGAKLKRMENDINEMLIEIIMQYADDPKFMPNTNKSWIALGKEYKSDGKGKSLIIKDYLDGMEKVMKKHSKILGTLLTDYTKKRIQEPDPDSGDKPMWDELVVNNFKIKKIHLSPWVGSDFEDDDDIDGFPFELYQDVGDMVDYFTRTVQNIKL*
Ga0068503_1021910814	F023211	N/A	MIRFKQYLREFAVQSTSDYVFDTTSGNSSSLKIPISGPMFKRIWPDTIRATVFHTTSLEGLEGIKKLEEGKKSISV*
Ga0068503_102191083	F035798	AGGA	MKKFRQANADLYEISKKEKLAHDVALISEAGDMCGIPLDSLRSKVMRDRHKKICGIPKKGNPKSMWSKAAQKAAGGRGKLFNSLEEGPENIIILIQDITKQMIKALQKGDERKLIGLYKNLGKVIK*
Ga0068503_102191086	F090861	N/A	MKLKTFKELKDKNEGYQEDQNLADLVGGEASDMIKALKKGDVRKAITYYKVIGKLLK*