Scaffold Ga0068503_10216045

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10216045
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7414
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F002715	Metagenome / Metatranscriptome	535	Y
F006919	Metagenome	362	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_102160454	F002715	AGGA	MPEHELQSVKLEVGLLKNEVEVRGQQIETLLQKLDLTTDKLQELTVQIIKLNTRQEDYLRHTSNMTDEFKILHTRIGDLHDKQLAANKEIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAVAHFKD*
Ga0068503_102160455	F000245	AGGA	MKTFTRFKESRLDDKLDKLVSDEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFPTPSGDMMIHVFLRKMAPPAKKHTMAFNYQLEDK*
Ga0068503_102160456	F006919	GAG	MKSFIQHLKEFASYSTSDLVFMNNGQGSASSGLMIPLSGPMFKRIWPDTIRTTVFHVLSAEDIYKLKKLEGGKKTISAFFTMMSRYLEGGIAAGGGVVAELEADVIVSARDDIMSTVDTAGRRWVEMSWFANAQRGGTGPKFAVVERELNDLIRELVLKHLSPILGKDRVRREFEFELWNDMKKHLSGDGKALRLVIKDYFDGVEKIIKKNSEVMSSIFYGYAKSKRQTDSSWDEQIVNNIKIKKIHYIPIKVDNEEEDGNIENEEQQENIDAFVAKYKIPRKRWEYSSELEIYTREVVAKEIGRKI*