Scaffold Ga0068503_10215956

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10215956
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5867
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F027651	Metagenome / Metatranscriptome	194	Y
F047304	Metagenome / Metatranscriptome	150	Y
F054947	Metagenome	139	N
F062152	Metagenome / Metatranscriptome	131	Y
F078832	Metagenome	116	Y
F105352	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_1021595611	F004418	AGG	MKIRNNNIINWLKDDWKNNRFRLFCESIGSLCFIGIYVLMAWYGDSVSIATIFGIQIVGSTLHIINAYLRNSINLMVLNIIVIAIAVFGIAKMYL*
Ga0068503_1021595612	F027651	N/A	MKIKNLVQKQLKWEVVGLANAVNKNYHGWLSCVTDKKEYCVESDKFGHGFGVFSGPKYYRIEASQKSGCNGIIDQKNSKMFSAAHKENHVWGFVVKADSVNHNRGDILTRNYEKVGNVLNGNTSNLGMPTSHYPNYTDCWAGADIW*
Ga0068503_1021595616	F054947	GAGG	MQMIAKNKIGKIFRDFNNEVLKGLIPKDMVIPKLRMQFSMQNLSWLCRNLQIKNRHHPEIKQTMAKLNTLRMKILLKGK*
Ga0068503_1021595617	F078832	AGG	MSTNLNNATDELVETYILHYGYEFKYGEFYECPGGHIWHWHDLVNEVENMSAPDLYNLCFLAEQDKEKNEEYFDLTRGA*
Ga0068503_102159564	F047304	GAGG	MEIKAQNWGAVITNNMVTEKELKKLKKNGGFVKCPTRKAQGSKNARWGQCE*
Ga0068503_102159567	F062152	GAGG	MGPHYMNELINHINKINEETRARGAVGFLTNDPDHWAGYGVFNIGQFQDYLEKEYQHNVRKDERRNQ*
Ga0068503_102159568	F105352	AGG	MNSYKLEIPRPQFDRIADAFEHQVIDINGYDIDKDTVIFTVSEKQRLWFEKIAKSKKIKWKGKVKVNPYYWITEMFLSRNIKRYLVK*
Ga0068503_102159569	F004418	AGG	MKKFINWLKDDWKNNRFRLFCETIGSLCFIAIYVLMAWYGEAVSILNIFLIQLVGSSLHIINAYLRNSVNLIALNCIVIAIALFGLAKMALSI*