Scaffold Ga0068503_10201302

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10201302
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2974
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Marine Group I → Marine Group I thaumarchaeote (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007140	Metagenome / Metatranscriptome	357	Y
F024888	Metagenome	204	Y
F025857	Metagenome / Metatranscriptome	200	Y
F038414	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_1020130210	F024888	N/A	DAIHKKEMEGKTPDEFAQERGFDNWMEYAAWSRHTGGDYNMMEMMLKSKWKEQDPEEFARQKKIQSDQSLREHSYISLPPEAWPTSFIGKKKKKWQPVHKSNFTAEQLEKVYDDFGVSGEPVEYRW*
Ga0068503_102013022	F007140	N/A	MRKGSHSLTQPQMRLIMSKKVKIDLTGTYEDSMNEIDNARITDEFKVHLREEYHKIYDDIGQMISMVSPTGIPSWVKLT*
Ga0068503_102013028	F038414	AGAAG	MTRPEKSDNTINELYKKRTSPKTIQIQDSKTARSKAEWLHISTSEEDGEGQGTYDVGRRVMKRERLADKKLRAKQAKAAELS*
Ga0068503_102013029	F025857	GAG	MRHTVAPGCFFIPEEDTPVNPIVGKKTSVLTKLPKPYYRTSELDDIPDNFVERMKKFKRVEVRKEEREVITPDGFAVSIAYNKSGYQLIPKEDL*