Scaffold Ga0068503_10199652

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10199652
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5495
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004881	Metagenome / Metatranscriptome	420	Y
F008085	Metagenome / Metatranscriptome	339	Y
F022672	Metagenome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_101996522	F008085	AGGA	MVRYAQKTYKQQRAEERNSAVFKNLTHSVDIIPDSMSIMTFSTQKEAGKFAENMRDKGYHILEIKDDYKS*
Ga0068503_101996523	F022672	N/A	MTTNRDYGSWITEELQSLLDAHIFNRDHFAETYSERSDLNKEIQEIKSEINRREKGE*
Ga0068503_101996525	F004881	GAG	MSYNFFETQGKPYQECTNPNDPEDKSLCLIVQDGSKFEGAIVRYTTFKLVEQELTGDDIACQYEYEIEVPPHDIKQKITDGEGKRFEKKLGEWVIEILQKQMDKYAAKSRSTDTEKSNT*