Scaffold Ga0068503_10197470

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10197470
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3021
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F030563	Metagenome	185	Y
F042009	Metagenome / Metatranscriptome	159	Y
F059074	Metagenome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_101974702	F030563	GGA	MIFVESVGLAVRMSYPTTRICSGCLNVFNRAECDIDISDFWNLPEELAWACSTKCAIDAKNNWLKPKNKMQNNAELS*
Ga0068503_101974704	F059074	GAG	MEIDLSLNRSLEELVSSYFEAYEAGMGCDSFLGVNTNATAADVSCYYVLENYLSDMGAI*
Ga0068503_101974706	F001048	AGGA	LKIKSTKQFWWRLNHLKRNGGEITVTDRTPEMDVKDFNRIELLVNKRVRWEIGSEGMEVWNACGYKDIPTLAKAYGIK*
Ga0068503_101974707	F042009	GGA	MICSNCGERISKGIDIGHHWNLSEDLAFACSEKCAEEAPKNWLSENPTTLYKNKFKKKD*