Scaffold Ga0068503_10190700

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10190700
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2099
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F016673	Metagenome	245	Y
F067830	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_101907001	F016410	N/A	RKFSSRKEQLEWADKLLRKLSDKNTGGVTPIIKQMITENYVRRLKK*
Ga0068503_101907003	F010920	GAG	MYDVLISYPIQVGAESKEHVKEIIMANELLRNAADLTLQITEIKSDEKE*
Ga0068503_101907004	F067830	GGAG	MKKNELDIVDEIDGKTLAYRTKPSVELYTATREVGFSEFSYSWEEVIAIGKKLEDLLEKDLVDVT*
Ga0068503_101907005	F016673	N/A	MISESDTEDIVIKSYVELYLKALNESRSYKFIKIIKSRMFELIKRKQIRNQTK*