Scaffold Ga0068503_10184859

Overview

Basic Information

• Taxon OID: 3300006340
• Scaffold ID: Ga0068503_10184859
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3803
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 770

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F040140	Metagenome	162	N
F054107	Metagenome / Metatranscriptome	140	N
F066859	Metagenome / Metatranscriptome	126	N
F068933	Metagenome	124	N
F078831	Metagenome	116	N
F081448	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068503_1018485910	F066859	AGG	LVHELPDNNGRVQTRINTSRAGYYVSNFDTAESVTLTPQGGGTIDIVLPPGAKVSIPDKIGMVAQGGNSSRNY
Ga0068503_101848594	F054107	GAG	MKKEKPEPKVNAAAGNFVNAVQTGLTEMNKRLQDMEQKVQEKDKLLNDMAMALKSQQDVLVNTPPPEVQGSEAERNQPMTKGEFFQIIKDGNQLLRQQTAGVDPRIERAIDMQDKLVDAMWEKMARALISDKDAAPGVS*
Ga0068503_101848595	F081448	AGG	VKALDVLTDIIKNKNLAKEYALQESKDLRVLSPKKDTALACLLSGIESVETIPTWVKTSWFNWIFYAMRMISDKEVDALAESMSKGLEEYKMAYFSQEFIESLPKEKRPAAEALLQPHLLKLKGSGLQWRKL*
Ga0068503_101848596	F040140	N/A	MPKFGKKFEDTGYDGSQHWKVLHDEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKALHPKDLDFALKHIVWSKKQFEPGLKCELC*
Ga0068503_101848597	F068933	GAG	MGKLDLLKQLHRELLMPKALPGMKGTIGRPSDYIPVHAAGQLKGYWKNVKHKPATGFQVSKKNKFKD*
Ga0068503_101848598	F033842	AGGAG	MQILKDLLKPDKLISKLSLGMKGAAGAAAATVALEAGTQLLERFVLDPHLPAAANVMNTVITNNAPGLGTVDVRDAIVLLPAEQQTYKMFSSGQKQAHFINALSSYVTKIVLRRTGLNPKEIADKTEKLITPRTMLPSVM*
Ga0068503_101848599	F078831	GAG	MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAISITINGLQNGGSVPTISAALGLVNPLEIDVGGIPQIRVRLSDMYAIDMLWLQHNPLTKISAGDDQEWICNQIVYPCWFPPSRAEATLSATYAAVTNADATEISITSEYLDGIPRNEALYYSEFSRNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSTTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWSEIQNPGIFNGQMFNSLEESPANTSILDNYRWLSLAKEPIPAGTRVQTDIMAGVNAEAVRTVQMQQVPFRGR*